The old default behaviour can be obtained with the following command-line parameters: -m -6 -g -6 -preferShorterRepeats With the new default values Phobos is looking for more imperfect repeats. * For two variants of a tandem repeats with the same alignment score Phobos now reports the longer variant. * Default values for the mismatch and gap penalty now are: -5 (used to be -6) In Version 3.3.10 the default values of several search parameters have changed: Version 3.3.10 fixes all known issues of version 3.3.2. If you do not have trailing spaces in sequence names Sorry for this inconvenience.Ī new Version, which corrects this bug will be available before Sept.
In the meantime please make sure sequence names have no trailing spaces. There will soon be an new version fixing this bug. On July, 27th the following bug has been reported: Trailing spaces in sequence names can cause a segmentation fault in the library function that reads the fasta input file. New parameters: -maskLower, -convert_gaps_to_Ns and -STAMPrun Fixed a bug in the GUI of Phobos, where the resetīutton did not reset the "Treat Ns as missense" This bug did not effect users of the Geneious plugin! Fixed a bug, where the repeat positions could be reported wrong, if gaps or If you have problems or if, unexpectedly, you discover a bug, please contact me! But my time is limited and it won't be in the very near future.įor 99.9% of the users speed is no problem anyway. I still intend to improve the main algorithm to make it even faster. There have been no bug reportsįor a long long time. The last major version was from September 2010 and users might ask: Is Phobos still maintained and supported? Yes. Fixed a bug, where trailing spaces in sequence names could cause a segmentation fault in the library function that reads the fasta input file. Most resent version: 3.3.12 (September 2010, new Linux binaries added September 2017) Requires command-line version of Phobos (version 3.3.10 or higher). Version 3.3.11 is currently being tested. STAMP-module for Staden pipeline - is known to work with version 3.3.2 of Phobos. Please contact me if non of the linux binaries work on your machine. Other operating systems are supported only upon request and only if I manage to find a machine toīuild the executable.
#Download geneious 10 windows#
Mac, Linux, and Windows executables will be made available for all major versions. I can't find the operating system I am looking for: Known-Phobos-bugs.txt file with known bugs of older and current version of Phobos Quickstart.txt file with installation and Quick Start instructions GUI (graphical user interface) version(s) of Phobos (usually only for Mac, Linux, Windows) If you are using the Linux platform, please tell me if you should experince the problem that on your system non of the binaries work.Ĭontent of the downloadable zip-archives: Please report any bugs you discover or any problems you have when trying to get the program to work.
#Download geneious 10 download#
The download counter of Phobos is approaching 10,000.
#Download geneious 10 software#
Software of Christoph Mayer, Phobos downloadĭownload academic (non-commercial) version of Phobos,
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